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Fastq File Mates Out Of Order : Useful Links

github.com

... paired-end reads into two FASTq files using the "outReadsUnmapped - Fastx" option, then the resulting files are out-of-order, i.e. mates of the ...

edwards.sdsu.edu

In certain cases, you need to sort FASTQ files by their sequence identifiers (e.g. to fix the order of paired-end or mate-pair sequences). There are several

www.biostars.org

Istvan is right. You will spend more time in figuring out how to put reads in proper order than reprocessing the original fastq files from scratch using trimmomatic. It ...

edwards.sdsu.edu

A lot of software benefits from paired fastq files that contain mate pair

en.wikipedia.org

1, the member of a pair, 1 or 2 (paired-end or mate-pair reads only). Y, Y if the

www.biorxiv.org

Paired end reads are usually provided as two fastq-format files, with each file

gensoft.pasteur.fr

is two FASTQ files containing read 1 and read 2 of each mate pair, respectively, in the same


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