I have a fasta file, but I want to reorder sequences based on new order of sequences. in fasta file. 1 2 3 4 and in ids file: 223 3000 433 201. I want to reorder ...
Don't implement a FASTA reader yourself! Like most cases, there are some smart people that already did this for you. Use for example ...
import random. import sys. from pyfaidx import Fasta. n = 10. faa = Fasta("file.faa") . for sample in random.sample(faa, n):. print(sample.name). for line in sample:.
Query sequences file with annotations replaced with predicted ones, ordered by clade. FASTA/PROJ_ordered.fasta, Optional. Aligned version of the above, still ...
I know I can read the output fasta file with python, and re-order the sequences by the sequence name, ...
The preservation of the input order works also for sequence data read from a FASTA file, but only for ClustalW and ClustalOmega; MUSCLE does not support this ( ...
We demonstrate the importance of the barley reference sequence for breeding by ... This brings the first comprehensive, completely ordered assembly of the
Sequence and annotation data downloads are usually made available within the ... the appropriate fasta files from our ftp server and extract sequence data using ... chromosome position, and the type indicates the annotation table requested.
microbialinformaticsj.biomedcentral.com
Sequence reads and assemblies from a number of outbreak strains,
and sequence length from the sequence records included in the seq.fasta file.