t1 > > > > then bgzip and tabix, I got this error. > > ~/bin/tabix -s 1 -b 2 -e 3 genePosition.gz > > [ti_index_core] the file out of order at line 88 > ...
When I apply the tabiz command: Tabix -p vcf file1.vcf.gz the following error appears: [ti_index_core] the file out of order at line 8. I had previous errors because I ...
Tabix is the first generic tool that indexes position sorted files in
The input data file must be position sorted and compressed by bgzip which has a gzip(1)
... 10:47] tabix index 1_2014-02-18_tumor-paired-sort-chr7_6014222_55087104 -prep-variants-10-497--raw.vcf.gz [2014-03-07 10:47] [ti_index_core] the file out ...
compressing the file with bgzip... > making tabix index... > [ti_index_core] the file out of order at line 176099 > Error in value[[3L]](cond) : > internal: samtools ...
On http://www.htslib.org/doc/tabix.html it is indicated that the file
IllegalArgumentException: Features added out of order: previous (TabixFeature{ referenceIndex=1, start=241726030, end=241726030, ...
Tabix is the first generic tool that indexes position sorted files in TAB-delimited formats such as GFF, BED, PSL, SAM and SQL export, and ...
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